J3_6MPF_004
3D structure
- PDB id
- 6MPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6MPF|1|A|U|848, 6MPF|1|A|A|850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MPF_004 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0719
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6MPF|1|A|C|809
6MPF|1|A|U|810
6MPF|1|A|A|811
6MPF|1|A|G|812
*
6MPF|1|A|C|834
6MPF|1|A|G|835
6MPF|1|A|A|836
6MPF|1|A|A|837
6MPF|1|A|G|838
*
6MPF|1|A|C|845
6MPF|1|A|G|846
6MPF|1|A|U|847
6MPF|1|A|U|848
6MPF|1|A|A|849
6MPF|1|A|A|850
6MPF|1|A|G|851
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S8
Coloring options: