J3_6MPF_015

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6MPF|1|A|U|1193, 6MPF|1|A|C|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MPF_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.12

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6MPF|1|A|C|967
6MPF|1|A|U|968
6MPF|1|A|U|969
6MPF|1|A|G|970
6MPF|1|A|A|971
6MPF|1|A|C|972
6MPF|1|A|A|973
6MPF|1|A|U|974
*
6MPF|1|A|A|1026
6MPF|1|A|C|1027
6MPF|1|A|A|1028
6MPF|1|A|G|1029
*
6MPF|1|A|C|1191
6MPF|1|A|U|1192
6MPF|1|A|U|1193
6MPF|1|A|A|1194
6MPF|1|A|C|1195
6MPF|1|A|G|1196

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z