J3_6MPI_016

3D structure

PDB id

6MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6MPI|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MPI_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1398

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6MPI|1|A|C|990
6MPI|1|A|U|991
6MPI|1|A|U|992
6MPI|1|A|G|993
6MPI|1|A|A|994
6MPI|1|A|C|995
6MPI|1|A|A|996
6MPI|1|A|U|997
*
6MPI|1|A|A|1044
6MPI|1|A|C|1045
6MPI|1|A|A|1046
6MPI|1|A|G|1047
*
6MPI|1|A|C|1210
6MPI|1|A|U|1211
6MPI|1|A|U|1212
6MPI|1|A|A|1213
6MPI|1|A|C|1214
6MPI|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z