J3_6MTB_044

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

6MTB|1|9|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTB_044 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1012

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

6MTB|1|9|A|40
6MTB|1|9|G|41
6MTB|1|9|A|42
6MTB|1|9|U|43
6MTB|1|9|U|44
6MTB|1|9|A|45
6MTB|1|9|A|46
6MTB|1|9|G|47
*
6MTB|1|9|C|479
6MTB|1|9|G|480
6MTB|1|9|C|481
6MTB|1|9|G|482
6MTB|1|9|C|483
6MTB|1|9|A2M|484
6MTB|1|9|A|485
6MTB|1|9|A|486
6MTB|1|9|U|487
*
6MTB|1|9|A|512
6MTB|1|9|G|513
6MTB|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain XX

40S ribosomal protein S23