J3_6MTC_008
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAG*C(B9H)AUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6MTC|1|5|U|2788, 6MTC|1|5|A|2789
- QA status
- Modified nucleotides: B9H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MTC_008 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.2393
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6MTC|1|5|G|2402
6MTC|1|5|A|2403
6MTC|1|5|A|2404
6MTC|1|5|G|2405
*
6MTC|1|5|C|2785
6MTC|1|5|B9H|2786
6MTC|1|5|A|2787
6MTC|1|5|U|2788
6MTC|1|5|A|2789
6MTC|1|5|U|2790
6MTC|1|5|C|2791
*
6MTC|1|5|G|2800
6MTC|1|5|U|2801
6MTC|1|5|C|2802
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
Coloring options: