J3_6MTC_028

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6MTC|1|9|G|1274, 6MTC|1|9|G|1507, 6MTC|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTC_028 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1306

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6MTC|1|9|C|1272
6MTC|1|9|C|1273
6MTC|1|9|G|1274
6MTC|1|9|G|1275
6MTC|1|9|A|1276
6MTC|1|9|C|1277
*
6MTC|1|9|G|1320
6MTC|1|9|G|1321
6MTC|1|9|G|1322
6MTC|1|9|U|1323
6MTC|1|9|G|1324
*
6MTC|1|9|U|1504
6MTC|1|9|U|1505
6MTC|1|9|A|1506
6MTC|1|9|G|1507
6MTC|1|9|A|1508
6MTC|1|9|U|1509
6MTC|1|9|G|1510

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

40S ribosomal protein S10

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a