J3_6MTD_011

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_011 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2604

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6MTD|1|5|U|2575
6MTD|1|5|G|2576
*
6MTD|1|5|C|2585
6MTD|1|5|G|2586
6MTD|1|5|A|2587
6MTD|1|5|C|2588
6MTD|1|5|C|2589
*
6MTD|1|5|G|2756
6MTD|1|5|A|2757

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

eL27

Chain g

eL34