J3_6MTD_012

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_012 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.2856

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6MTD|1|5|C|3937
6MTD|1|5|G|3938
6MTD|1|5|G|3939
*
6MTD|1|5|C|4074
6MTD|1|5|U|4075
6MTD|1|5|G|4076
6MTD|1|5|A|4077
6MTD|1|5|C|4078
*
6MTD|1|5|G|4168
6MTD|1|5|G|4169
6MTD|1|5|A|4170
6MTD|1|5|C|4171
6MTD|1|5|A|4172
6MTD|1|5|G|4173

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

eL15