J3_6MTD_015

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

6MTD|1|5|A|4280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_015 not in the Motif Atlas

Homologous match to J3_5TBW_013

Geometric discrepancy: 0.0942

The information below is about J3_5TBW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|C|4241
6MTD|1|5|U|4242
6MTD|1|5|C|4243
*
6MTD|1|5|G|4267
6MTD|1|5|A|4268
6MTD|1|5|G|4269
*
6MTD|1|5|C|4278
6MTD|1|5|A|4279
6MTD|1|5|A|4280
6MTD|1|5|A|4281
6MTD|1|5|A|4282
6MTD|1|5|G|4283

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

uL18

Chain J

uL5

Chain T

eL21