J3_6MTD_016

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6MTD|1|5|A|4464, 6MTD|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_016 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1195

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6MTD|1|5|U|4463
6MTD|1|5|A|4464
6MTD|1|5|U|4465
6MTD|1|5|C|4466
*
6MTD|1|5|G|4491
6MTD|1|5|U|4492
6MTD|1|5|U|4493
*
6MTD|1|5|A|4507
6MTD|1|5|C|4508
6MTD|1|5|U|4509
6MTD|1|5|A|4510
6MTD|1|5|A|4511
6MTD|1|5|U|4512
6MTD|1|5|A|4513

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14