J3_6MTD_022

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_022 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2232

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6MTD|1|9|A|816
6MTD|1|9|G|817
6MTD|1|9|A|818
6MTD|1|9|G|819
*
6MTD|1|9|C|829
6MTD|1|9|A|830
6MTD|1|9|G|831
*
6MTD|1|9|C|843
6MTD|1|9|U|844
6MTD|1|9|G|845
6MTD|1|9|G|846
6MTD|1|9|A|847
6MTD|1|9|U|848

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24