J3_6MTD_025

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

6MTD|1|9|A|1679

QA status

Modified nucleotides: B8Q, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_025 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.1269

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6MTD|1|9|C|1218
6MTD|1|9|B8Q|1219
6MTD|1|9|A|1220
6MTD|1|9|G|1221
*
6MTD|1|9|C|1645
6MTD|1|9|C|1646
6MTD|1|9|A|1647
6MTD|1|9|G|1648
6MTD|1|9|U|1649
6MTD|1|9|A|1650
6MTD|1|9|A|1651
*
6MTD|1|9|U|1673
6MTD|1|9|G|1674
6MTD|1|9|A|1675
6MTD|1|9|U|1676
6MTD|1|9|U|1677
6MTD|1|9|A2M|1678
6MTD|1|9|A|1679
6MTD|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain cc

eS28