J3_6MTD_026

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_026 not in the Motif Atlas

Homologous match to J3_8C3A_039

Geometric discrepancy: 0.0852

The information below is about J3_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6MTD|1|9|U|1225
6MTD|1|9|G|1226
6MTD|1|9|G|1227
6MTD|1|9|A|1228
*
6MTD|1|9|U|1530
6MTD|1|9|A|1531
6MTD|1|9|C|1532
*
6MTD|1|9|G|1638
6MTD|1|9|G|1639
6MTD|1|9|A|1640
6MTD|1|9|A|1641

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19