Motif J3_52655.3 Version J3_52655.3 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-6 | 4-5 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_077 | 8P9A | 0.1051 | 0 | sR | SSU rRNA | U | 1168 | G | 1169 | G | 1170 | A | 1171 | * | U | 1468 | A | 1469 | C | 1470 | * | G | 1574 | G | 1575 | A | 1576 | A | 1577 | cWW | tSH | cWW | cWW | cWW |
| 2 | J3_5J7L_005 | 5J7L | 0.0000 | 0 | AA | SSU rRNA | U | 943 | G | 944 | G | 945 | A | 946 | * | U | 1235 | A | 1236 | C | 1237 | * | G | 1337 | G | 1338 | A | 1339 | A | 1340 | cWW | tSH | cWW | cWW | cWW |
| 3 | J3_4LFB_003 | 4LFB | 0.0806 | 0 | A | SSU rRNA | U | 943 | G | 944 | G | 945 | A | 946 | * | U | 1235 | A | 1236 | C | 1237 | * | G | 1337 | G | 1338 | A | 1339 | A | 1340 | cWW | tSH | cWW | cWW | cWW |
| 4 | J3_8C3A_039 | 8C3A | 0.1016 | 0 | CM | SSU rRNA | U | 1153 | G | 1154 | G | 1155 | A | 1156 | * | U | 1454 | A | 1455 | C | 1456 | * | G | 1561 | G | 1562 | A | 1563 | A | 1564 | cWW | tSH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGA*UAC*GGAA | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*A*GA | 4 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.08 | Max 0.11
Coloring options: