J3_8C3A_039

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8C3A|1|CM|U|1153
8C3A|1|CM|G|1154
8C3A|1|CM|G|1155
8C3A|1|CM|A|1156
*
8C3A|1|CM|U|1454
8C3A|1|CM|A|1455
8C3A|1|CM|C|1456
*
8C3A|1|CM|G|1561
8C3A|1|CM|G|1562
8C3A|1|CM|A|1563
8C3A|1|CM|A|1564

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DD

40S ribosomal protein S16

Chain DF

40S ribosomal protein S18-B

Chain DG

40S ribosomal protein S19-A