J3_6MTD_028
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6MTD|1|9|G|1274, 6MTD|1|9|G|1507, 6MTD|1|9|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MTD_028 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1182
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6MTD|1|9|C|1272
6MTD|1|9|C|1273
6MTD|1|9|G|1274
6MTD|1|9|G|1275
6MTD|1|9|A|1276
6MTD|1|9|C|1277
*
6MTD|1|9|G|1320
6MTD|1|9|G|1321
6MTD|1|9|G|1322
6MTD|1|9|U|1323
6MTD|1|9|G|1324
*
6MTD|1|9|U|1504
6MTD|1|9|U|1505
6MTD|1|9|A|1506
6MTD|1|9|G|1507
6MTD|1|9|A|1508
6MTD|1|9|U|1509
6MTD|1|9|G|1510
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain KK
- eS10
- Chain dd
- uS14
- Chain ff
- eS31
- Chain v
- eEF2
Coloring options: