J3_6MTD_038

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

6MTD|1|5|A|1805, 6MTD|1|5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_038 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4508

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6MTD|1|5|U|1726
6MTD|1|5|U|1727
*
6MTD|1|5|A|1802
6MTD|1|5|G|1803
6MTD|1|5|A|1804
6MTD|1|5|A|1805
6MTD|1|5|G|1806
*
6MTD|1|5|C|1832
6MTD|1|5|G|1833
6MTD|1|5|U|1834
6MTD|1|5|G|1835
6MTD|1|5|G|1836
6MTD|1|5|A|1837

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain T

eL21

Chain b

eL29