3D structure

PDB id
6MTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGG*CUGAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6MTE_014 not in the Motif Atlas
Geometric match to J3_7A0S_009
Geometric discrepancy: 0.2883
The information below is about J3_7A0S_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

6MTE|1|5|C|3937
6MTE|1|5|G|3938
6MTE|1|5|G|3939
*
6MTE|1|5|C|4074
6MTE|1|5|U|4075
6MTE|1|5|G|4076
6MTE|1|5|A|4077
6MTE|1|5|C|4078
*
6MTE|1|5|G|4168
6MTE|1|5|G|4169
6MTE|1|5|A|4170
6MTE|1|5|C|4171
6MTE|1|5|A|4172
6MTE|1|5|G|4173

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
uL2
Chain G
eL8
Chain N
eL15

Coloring options:


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