J3_6MTE_017

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

6MTE|1|5|A|4280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTE_017 not in the Motif Atlas

Homologous match to J3_5TBW_013

Geometric discrepancy: 0.1012

The information below is about J3_5TBW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6MTE|1|5|C|4241
6MTE|1|5|U|4242
6MTE|1|5|C|4243
*
6MTE|1|5|G|4267
6MTE|1|5|A|4268
6MTE|1|5|G|4269
*
6MTE|1|5|C|4278
6MTE|1|5|A|4279
6MTE|1|5|A|4280
6MTE|1|5|A|4281
6MTE|1|5|A|4282
6MTE|1|5|G|4283

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

uL18

Chain J

uL5

Chain T

eL21

Chain o

eL42