J3_6MWN_001
3D structure
- PDB id
- 6MWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.84 Å
Loop
- Sequence
- CUUAAAUG*CUC*GG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6MWN_001 not in the Motif Atlas
- Homologous match to J3_6MWN_002
- Geometric discrepancy: 0.0742
- The information below is about J3_6MWN_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_93059.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6MWN|1|A|C|610
6MWN|1|A|U|611
6MWN|1|A|U|612
6MWN|1|A|A|613
6MWN|1|A|A|614
6MWN|1|A|A|615
6MWN|1|A|U|616
6MWN|1|A|G|617
*
6MWN|1|A|C|639
6MWN|1|A|U|640
6MWN|1|A|C|641
*
6MWN|1|A|G|666
6MWN|1|A|G|667
Current chains
- Chain A
- HAV dV RNA (92-MER)
Nearby chains
- Chain C
- Fab HAVx Heavy Chain
- Chain H
- Fab HAVx Heavy Chain
Coloring options: