J3_6N1D_007

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

6N1D|1|A16S|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_007 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2375

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6N1D|1|A16S|C|990
6N1D|1|A16S|U|991
6N1D|1|A16S|U|992
6N1D|1|A16S|G|993
*
6N1D|1|A16S|C|1045
6N1D|1|A16S|A|1046
6N1D|1|A16S|G|1047
*
6N1D|1|A16S|C|1210
6N1D|1|A16S|U|1211
6N1D|1|A16S|U|1212
6N1D|1|A16S|A|1213
6N1D|1|A16S|C|1214
6N1D|1|A16S|G|1215

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS14

30S ribosomal protein S14 type Z