J3_6N1D_017
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N1D_017 not in the Motif Atlas
- Homologous match to J3_4WF9_003
- Geometric discrepancy: 0.1115
- The information below is about J3_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.7
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6N1D|1|A23S|C|698
6N1D|1|A23S|A|699
6N1D|1|A23S|G|700
*
6N1D|1|A23S|C|732
6N1D|1|A23S|G|733
6N1D|1|A23S|A|734
6N1D|1|A23S|A|735
6N1D|1|A23S|C|736
*
6N1D|1|A23S|G|760
6N1D|1|A23S|A|761
6N1D|1|A23S|U|762
6N1D|1|A23S|G|763
Current chains
- Chain A23S
- 23S rRNA
Nearby chains
- Chain AL02
- 50S ribosomal protein L2
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