J3_6N1D_022

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_022 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.1193

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6N1D|1|A23S|U|2091
6N1D|1|A23S|U|2092
6N1D|1|A23S|G|2093
*
6N1D|1|A23S|C|2196
6N1D|1|A23S|U|2197
6N1D|1|A23S|A|2198
6N1D|1|A23S|A|2199
6N1D|1|A23S|C|2200
*
6N1D|1|A23S|G|2223
6N1D|1|A23S|G|2224
6N1D|1|A23S|A|2225
6N1D|1|A23S|C|2226
6N1D|1|A23S|A|2227
6N1D|1|A23S|G|2228

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL09

50S ribosomal protein L9

Chain AL28

50S ribosomal protein L28