J3_6N1D_029
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 6N1D|1|B16S|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N1D_029 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1457
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6N1D|1|B16S|U|672
6N1D|1|B16S|G|673
*
6N1D|1|B16S|C|717
6N1D|1|B16S|G|718
6N1D|1|B16S|C|719
6N1D|1|B16S|C|720
6N1D|1|B16S|G|721
6N1D|1|B16S|A|722
6N1D|1|B16S|U|723
6N1D|1|B16S|G|724
6N1D|1|B16S|G|725
*
6N1D|1|B16S|C|732
6N1D|1|B16S|A|733
6N1D|1|B16S|G|734
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BMRN
- mRNA
- Chain BS06
- 30S ribosomal protein S6
- Chain BS11
- 30S ribosomal protein S11
- Chain BS15
- 30S ribosomal protein S15
- Chain BS18
- 30S ribosomal protein S18
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