J3_6N1D_038
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGC*GGAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 6N1D|1|B16S|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N1D_038 not in the Motif Atlas
- Homologous match to J3_4LFB_008
- Geometric discrepancy: 0.2127
- The information below is about J3_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6N1D|1|B16S|C|1116
6N1D|1|B16S|G|1117
6N1D|1|B16S|C|1118
*
6N1D|1|B16S|G|1155
6N1D|1|B16S|G|1156
6N1D|1|B16S|A|1157
6N1D|1|B16S|C|1158
*
6N1D|1|B16S|G|1181
6N1D|1|B16S|G|1182
6N1D|1|B16S|A|1183
6N1D|1|B16S|G|1184
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BS02
- 30S ribosomal protein S2
- Chain BS07
- 30S ribosomal protein S7
- Chain BS09
- 30S ribosomal protein S9
- Chain BS10
- 30S ribosomal protein S10
- Chain BS14
- 30S ribosomal protein S14 type Z
Coloring options: