J3_6N1D_048

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6N1D|1|B23S|A|1349, 6N1D|1|B23S|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_048 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.2465

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6N1D|1|B23S|G|1344
6N1D|1|B23S|C|1345
6N1D|1|B23S|G|1346
6N1D|1|B23S|G|1347
6N1D|1|B23S|G|1348
6N1D|1|B23S|A|1349
6N1D|1|B23S|C|1350
*
6N1D|1|B23S|G|1381
6N1D|1|B23S|G|1382
6N1D|1|B23S|C|1383
6N1D|1|B23S|A|1384
6N1D|1|B23S|G|1385
*
6N1D|1|B23S|C|1402
6N1D|1|B23S|C|1403

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL23

50S ribosomal protein L23

Chain BL34

50S ribosomal protein L34