J3_6N1D_052

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6N1D|1|B23S|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_052 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1689

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|C|2517
6N1D|1|B23S|A|2518
6N1D|1|B23S|U|2519
6N1D|1|B23S|C|2520
*
6N1D|1|B23S|G|2545
6N1D|1|B23S|U|2546
6N1D|1|B23S|U|2547
*
6N1D|1|B23S|A|2561
6N1D|1|B23S|U|2562
6N1D|1|B23S|U|2563
6N1D|1|B23S|A|2564
6N1D|1|B23S|A|2565
6N1D|1|B23S|A|2566
6N1D|1|B23S|G|2567

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL13

50S ribosomal protein L13

Chain BL14

50S ribosomal protein L14