J3_6N1D_063

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N1D_063 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1409

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|A23S|G|1424
6N1D|1|A23S|G|1425
6N1D|1|A23S|G|1426
6N1D|1|A23S|A|1427
6N1D|1|A23S|C|1428
6N1D|1|A23S|G|1429
*
6N1D|1|A23S|C|1564
6N1D|1|A23S|C|1565
*
6N1D|1|A23S|G|1568
6N1D|1|A23S|A|1569
6N1D|1|A23S|A|1570
6N1D|1|A23S|A|1571
6N1D|1|A23S|A|1572
6N1D|1|A23S|G|1573
6N1D|1|A23S|C|1574

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL02

50S ribosomal protein L2