J3_6N8J_007

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N8J_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2431

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6N8J|1|1|G|1230
6N8J|1|1|A|1231
6N8J|1|1|C|1232
*
6N8J|1|1|G|1256
6N8J|1|1|C|1257
6N8J|1|1|U|1258
6N8J|1|1|A|1259
6N8J|1|1|A|1260
6N8J|1|1|G|1261
6N8J|1|1|G|1262
*
6N8J|1|1|C|1277
6N8J|1|1|A|1278
6N8J|1|1|C|1279

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain K

60S ribosomal protein L12

Chain W

Ribosome assembly factor MRT4