J3_6N8J_018

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

6N8J|1|1|U|343, 6N8J|1|1|A|351, 6N8J|1|3|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N8J_018 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0839

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6N8J|1|1|C|340
6N8J|1|1|G|341
6N8J|1|1|A|342
6N8J|1|1|U|343
6N8J|1|1|A|344
6N8J|1|1|G|345
6N8J|1|1|C|346
6N8J|1|1|G|347
6N8J|1|1|A|348
6N8J|1|1|A|349
6N8J|1|1|C|350
6N8J|1|1|A|351
6N8J|1|1|A|352
6N8J|1|1|G|353
6N8J|1|1|U|354
6N8J|1|1|A|355
6N8J|1|1|C|356
*
6N8J|1|1|G|363
6N8J|1|1|G|364
6N8J|1|1|A|365
6N8J|1|1|A|366
6N8J|1|1|A|367
6N8J|1|1|G|368
*
6N8J|1|3|C|21
6N8J|1|3|U|22
6N8J|1|3|U|23
6N8J|1|3|G|24

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Chain 3

5.8S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A

Chain b

Nucleolar GTP-binding protein 1

Chain j

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L39