J3_6N8J_027
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6N8J|1|1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8J_027 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.118
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6N8J|1|1|G|2651
6N8J|1|1|U|2652
6N8J|1|1|C|2653
*
6N8J|1|1|G|2754
6N8J|1|1|C|2755
6N8J|1|1|C|2756
6N8J|1|1|U|2757
6N8J|1|1|A|2758
6N8J|1|1|U|2759
6N8J|1|1|C|2760
6N8J|1|1|G|2761
6N8J|1|1|A|2762
6N8J|1|1|U|2763
6N8J|1|1|C|2764
6N8J|1|1|C|2765
*
6N8J|1|1|G|2793
6N8J|1|1|G|2794
6N8J|1|1|U|2795
6N8J|1|1|G|2796
6N8J|1|1|C|2797
6N8J|1|1|C|2798
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain a
- 60S ribosomal protein L28
- Chain m
- Nucleolar GTP-binding protein 2
- Chain q
- 60S ribosomal protein L42-A
Coloring options: