J3_6N8M_011

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

6N8M|1|A|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N8M_011 not in the Motif Atlas

Geometric match to J3_8C3A_054

Geometric discrepancy: 0.1969

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6N8M|1|A|C|1631
6N8M|1|A|A|1632
*
6N8M|1|A|U|1641
6N8M|1|A|A|1642
6N8M|1|A|A|1643
6N8M|1|A|C|1644
6N8M|1|A|U|1645
*
6N8M|1|A|A|1810
6N8M|1|A|G|1811

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain m

60S ribosomal protein L27-A

Chain t

60S ribosomal protein L34-A