J3_6N8M_014
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 6N8M|1|A|A|2887
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8M_014 not in the Motif Atlas
- Geometric match to J3_5TBW_014
- Geometric discrepancy: 0.106
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N8M|1|A|U|2886
6N8M|1|A|A|2887
6N8M|1|A|U|2888
6N8M|1|A|C|2889
*
6N8M|1|A|G|2914
6N8M|1|A|U|2915
6N8M|1|A|U|2916
*
6N8M|1|A|A|2930
6N8M|1|A|C|2931
6N8M|1|A|U|2932
6N8M|1|A|A|2933
6N8M|1|A|A|2934
6N8M|1|A|U|2935
6N8M|1|A|A|2936
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal export protein NMD3
- Chain b
- 60S ribosomal protein L16-A
- Chain i
- 60S ribosomal protein L23-A
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