J3_6N8N_007

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

6N8N|1|A|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N8N_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1526

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6N8N|1|A|U|1479
6N8N|1|A|G|1480
6N8N|1|A|A|1481
6N8N|1|A|A|1482
6N8N|1|A|G|1483
6N8N|1|A|U|1484
6N8N|1|A|G|1485
*
6N8N|1|A|C|1857
6N8N|1|A|A|1858
6N8N|1|A|A|1859
*
6N8N|1|A|U|1871
6N8N|1|A|C|1872
6N8N|1|A|U|1873
6N8N|1|A|A|1874

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain e

60S ribosomal protein L19-A

Chain t

60S ribosomal protein L34-A