J3_6N8N_016
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 6N8N|1|A|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8N_016 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1298
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6N8N|1|A|C|185
6N8N|1|A|U|186
6N8N|1|A|A|187
6N8N|1|A|U|188
6N8N|1|A|G|189
*
6N8N|1|A|C|205
6N8N|1|A|G|206
6N8N|1|A|U|207
6N8N|1|A|C|208
6N8N|1|A|A|209
6N8N|1|A|U|210
6N8N|1|A|A|211
6N8N|1|A|G|212
6N8N|1|A|A|213
6N8N|1|A|G|214
*
6N8N|1|A|C|226
6N8N|1|A|G|227
6N8N|1|A|U|228
6N8N|1|A|G|229
6N8N|1|A|U|230
6N8N|1|A|G|231
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4-A
- Chain l
- 60S ribosomal protein L26-A
Coloring options: