J3_6N9F_017
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6N9F|1|1a|U|871, 6N9F|1|1a|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N9F_017 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0832
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6N9F|1|1a|C|826
6N9F|1|1a|U|827
6N9F|1|1a|A|828
6N9F|1|1a|G|829
*
6N9F|1|1a|C|857
6N9F|1|1a|G|858
6N9F|1|1a|A|859
6N9F|1|1a|A|860
6N9F|1|1a|G|861
*
6N9F|1|1a|C|868
6N9F|1|1a|G|869
6N9F|1|1a|U|870
6N9F|1|1a|U|871
6N9F|1|1a|A|872
6N9F|1|1a|A|873
6N9F|1|1a|G|874
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S Ribosomal Protein S2
- Chain 1h
- 30S Ribosomal Protein S8
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