J3_6ND5_056
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6ND5|1|1A|U|448, 6ND5|1|1A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ND5_056 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.057
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6ND5|1|1A|C|32
6ND5|1|1A|U|33
6ND5|1|1A|C|34
6ND5|1|1A|G|35
*
6ND5|1|1A|C|445
6ND5|1|1A|G|446
6ND5|1|1A|A|447
6ND5|1|1A|U|448
6ND5|1|1A|A|449
6ND5|1|1A|G|450
6ND5|1|1A|C|451
6ND5|1|1A|G|452
6ND5|1|1A|C|453
6ND5|1|1A|A|454
6ND5|1|1A|C|455
6ND5|1|1A|C|456
6ND5|1|1A|A|457
6ND5|1|1A|G|458
6ND5|1|1A|U|459
6ND5|1|1A|A|460
6ND5|1|1A|C|461
*
6ND5|1|1A|G|468
6ND5|1|1A|G|469
6ND5|1|1A|A|470
6ND5|1|1A|A|471
6ND5|1|1A|A|472
6ND5|1|1A|G|473
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1X
- 50S ribosomal protein L23
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