3D structure

PDB id
6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.85 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
6ND6|1|2a|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ND6_043 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0998
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02285.1
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
2

Unit IDs

6ND6|1|2a|C|826
6ND6|1|2a|U|827
6ND6|1|2a|A|828
6ND6|1|2a|G|829
*
6ND6|1|2a|C|857
6ND6|1|2a|G|858
6ND6|1|2a|A|859
6ND6|1|2a|A|860
6ND6|1|2a|G|861
*
6ND6|1|2a|C|868
6ND6|1|2a|G|869
6ND6|1|2a|U|870
6ND6|1|2a|U|871
6ND6|1|2a|A|872
6ND6|1|2a|A|873
6ND6|1|2a|G|874

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2b
30S ribosomal protein S2
Chain 2h
30S ribosomal protein S8

Coloring options:


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