J3_6NDK_004

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6NDK|1|QA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NDK_004 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.1507

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6NDK|1|QA|C|826
6NDK|1|QA|U|827
6NDK|1|QA|A|828
6NDK|1|QA|G|829
*
6NDK|1|QA|C|857
6NDK|1|QA|G|858
6NDK|1|QA|A|859
6NDK|1|QA|A|860
6NDK|1|QA|G|861
*
6NDK|1|QA|C|868
6NDK|1|QA|G|869
6NDK|1|QA|U|870
6NDK|1|QA|U|871
6NDK|1|QA|A|872
6NDK|1|QA|A|873
6NDK|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8