J3_6NDK_013

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6NDK|1|QA|U|1240, 6NDK|1|QA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NDK_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1868

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6NDK|1|QA|C|1237
6NDK|1|QA|A|1238
6NDK|1|QA|A|1239
6NDK|1|QA|U|1240
6NDK|1|QA|G|1241
*
6NDK|1|QA|C|1296
6NDK|1|QA|C|1297
6NDK|1|QA|C|1298
6NDK|1|QA|A|1299
6NDK|1|QA|G|1300
6NDK|1|QA|U|1301
6NDK|1|QA|U|1302
6NDK|1|QA|C|1303
*
6NDK|1|QA|G|1334
6NDK|1|QA|C|1335
6NDK|1|QA|C|1336
6NDK|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx