J3_6NDK_063
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 6NDK|1|RA|U|504, 6NDK|1|RA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NDK_063 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1222
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6NDK|1|RA|G|30
6NDK|1|RA|C|31
*
6NDK|1|RA|G|474
6NDK|1|RA|U|475
6NDK|1|RA|G|476
6NDK|1|RA|A|477
6NDK|1|RA|A|478
6NDK|1|RA|A|479
6NDK|1|RA|A|480
6NDK|1|RA|G|481
6NDK|1|RA|A|482
6NDK|1|RA|A|483
6NDK|1|RA|C|484
*
6NDK|1|RA|G|496
6NDK|1|RA|A|497
6NDK|1|RA|G|498
6NDK|1|RA|U|499
6NDK|1|RA|G|500
6NDK|1|RA|A|501
6NDK|1|RA|A|502
6NDK|1|RA|A|503
6NDK|1|RA|U|504
6NDK|1|RA|A|505
6NDK|1|RA|G|506
6NDK|1|RA|A|507
6NDK|1|RA|G|508
6NDK|1|RA|C|509
6NDK|1|RA|C|510
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RU
- 50S ribosomal protein L20
- Chain RW
- 50S ribosomal protein L22
- Chain RY
- 50S ribosomal protein L24
Coloring options: