J3_6NDK_074

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NDK_074 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1664

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6NDK|1|XA|C|990
6NDK|1|XA|U|991
6NDK|1|XA|U|992
6NDK|1|XA|G|993
6NDK|1|XA|A|994
6NDK|1|XA|C|995
6NDK|1|XA|A|996
6NDK|1|XA|U|997
*
6NDK|1|XA|A|1044
6NDK|1|XA|C|1045
6NDK|1|XA|A|1046
6NDK|1|XA|G|1047
*
6NDK|1|XA|C|1210
6NDK|1|XA|U|1211
6NDK|1|XA|U|1212
6NDK|1|XA|A|1213
6NDK|1|XA|C|1214
6NDK|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z