J3_6NTA_039

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6NTA|1|XA|U|1240, 6NTA|1|XA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NTA_039 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1918

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6NTA|1|XA|C|1237
6NTA|1|XA|A|1238
6NTA|1|XA|A|1239
6NTA|1|XA|U|1240
6NTA|1|XA|G|1241
*
6NTA|1|XA|C|1296
6NTA|1|XA|C|1297
6NTA|1|XA|C|1298
6NTA|1|XA|A|1299
6NTA|1|XA|G|1300
6NTA|1|XA|U|1301
6NTA|1|XA|U|1302
6NTA|1|XA|C|1303
*
6NTA|1|XA|G|1334
6NTA|1|XA|C|1335
6NTA|1|XA|C|1336
6NTA|1|XA|G|1337

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx