J3_6NUO_023

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6NUO|1|RA|A|2530, 6NUO|1|RA|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NUO_023 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0671

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6NUO|1|RA|C|2529
6NUO|1|RA|A|2530
6NUO|1|RA|U|2531
6NUO|1|RA|C|2532
*
6NUO|1|RA|G|2557
6NUO|1|RA|U|2558
6NUO|1|RA|U|2559
*
6NUO|1|RA|A|2573
6NUO|1|RA|U|2574
6NUO|1|RA|U|2575
6NUO|1|RA|A|2576
6NUO|1|RA|A|2577
6NUO|1|RA|A|2578
6NUO|1|RA|G|2579

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14