3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6NUO_048 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.0674
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

6NUO|1|YA|U|2113
6NUO|1|YA|U|2114
6NUO|1|YA|G|2115
*
6NUO|1|YA|C|2218
6NUO|1|YA|U|2219
6NUO|1|YA|A|2220
6NUO|1|YA|A|2221
6NUO|1|YA|C|2222
*
6NUO|1|YA|G|2235
6NUO|1|YA|G|2236
6NUO|1|YA|A|2237
6NUO|1|YA|C|2238
6NUO|1|YA|A|2239
6NUO|1|YA|G|2240

Current chains

Chain YA
23S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain Y1
50S ribosomal protein L28
Chain YD
50S ribosomal protein L2
Chain YI
50S ribosomal protein L9

Coloring options:


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