J3_6NUO_067

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NUO_067 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1549

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6NUO|1|XA|C|936
6NUO|1|XA|A|937
6NUO|1|XA|A|938
6NUO|1|XA|G|939
*
6NUO|1|XA|C|1344
6NUO|1|XA|U|1345
6NUO|1|XA|A|1346
6NUO|1|XA|G|1347
6NUO|1|XA|U|1348
6NUO|1|XA|A|1349
6NUO|1|XA|A|1350
*
6NUO|1|XA|U|1372
6NUO|1|XA|G|1373
6NUO|1|XA|A|1374
6NUO|1|XA|A|1375
6NUO|1|XA|U|1376
6NUO|1|XA|A|1377
6NUO|1|XA|C|1378
6NUO|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9