J3_6NWY_030

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6NWY|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NWY_030 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1007

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

6NWY|1|XA|C|826
6NWY|1|XA|U|827
6NWY|1|XA|A|828
6NWY|1|XA|G|829
*
6NWY|1|XA|C|857
6NWY|1|XA|G|858
6NWY|1|XA|A|859
6NWY|1|XA|A|860
6NWY|1|XA|G|861
*
6NWY|1|XA|C|868
6NWY|1|XA|G|869
6NWY|1|XA|U|870
6NWY|1|XA|U|871
6NWY|1|XA|A|872
6NWY|1|XA|A|873
6NWY|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8

Chain XX

mRNA