J3_6NWY_064

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6NWY|1|XA|C|48, 6NWY|1|XA|A|50, 6NWY|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NWY_064 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1151

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6NWY|1|XA|G|46
6NWY|1|XA|C|47
6NWY|1|XA|C|48
6NWY|1|XA|U|49
6NWY|1|XA|A|50
6NWY|1|XA|A|51
6NWY|1|XA|G|52
*
6NWY|1|XA|U|359
6NWY|1|XA|A|360
6NWY|1|XA|G|361
6NWY|1|XA|G|362
6NWY|1|XA|A|363
6NWY|1|XA|A|364
6NWY|1|XA|U|365
6NWY|1|XA|C|366
6NWY|1|XA|U|367
*
6NWY|1|XA|A|393
6NWY|1|XA|G|394
6NWY|1|XA|C|395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16