J3_6NY6_012
3D structure
- PDB id
- 6NY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 6NY6|1|A|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NY6_012 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1036
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
6NY6|1|A|C|1237
6NY6|1|A|A|1238
6NY6|1|A|A|1239
6NY6|1|A|U|1240
6NY6|1|A|G|1241
*
6NY6|1|A|C|1296
6NY6|1|A|C|1297
6NY6|1|A|C|1298
6NY6|1|A|A|1299
6NY6|1|A|G|1300
6NY6|1|A|U|1301
6NY6|1|A|U|1302
6NY6|1|A|C|1303
*
6NY6|1|A|G|1334
6NY6|1|A|C|1335
6NY6|1|A|C|1336
6NY6|1|A|G|1337
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
- Chain U
- 30S ribosomal protein Thx
Coloring options: