J3_6NY6_018
3D structure
- PDB id
- 6NY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NY6_018 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.191
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6NY6|1|A|C|990
6NY6|1|A|U|991
6NY6|1|A|U|992
6NY6|1|A|G|993
6NY6|1|A|A|994
6NY6|1|A|C|995
6NY6|1|A|A|996
6NY6|1|A|U|997
*
6NY6|1|A|A|1044
6NY6|1|A|C|1045
6NY6|1|A|A|1046
6NY6|1|A|G|1047
*
6NY6|1|A|C|1210
6NY6|1|A|U|1211
6NY6|1|A|U|1212
6NY6|1|A|A|1213
6NY6|1|A|C|1214
6NY6|1|A|G|1215
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain N
- 30S ribosomal protein S14 type Z
- Chain Y
- Toxin YoeB
- Chain Z
- Toxin YoeB
Coloring options: